106 lines
5.3 KiB
Docker
106 lines
5.3 KiB
Docker
FROM {{BASE_IMAGE}}
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LABEL maintainer "{{MAINTAINER}}"
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ENV PKG_PATH "$JULIA_PKGDIR/$JULIA_PKGVER/{{PKGNAME}}"
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# Note: The "/etc/yum/protected.d/*.conf" contains the names of packages which are
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# protected by yum and should not be removed. Protecting packages is necessary as
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# this avoids the problem of accidentally removing a dependency of a package which
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# is a runtime requirement.
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# Get security updates
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RUN yum -y update-minimal && \
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yum -y clean all
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# Install the current repo as a Julia package
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COPY . $PKG_PATH
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WORKDIR $PKG_PATH
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# Record SHA of the revision the git repo. Note that the repo may not have been in
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# a clean repo which makes the SHA the last known commit.
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RUN REF=$(cat .git/HEAD | cut -d' ' -f2) && \
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SHA=$(cat .git/$REF 2>/dev/null || echo $REF) && \
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echo $SHA > REVISION && echo "Revision: $SHA" && \
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rm -rf .git
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# Install system requirements.
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{{#!system}}# {{/!system}}ENV PKGS $(cat ./system-pkgs.txt)
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{{#!system}}# {{/!system}}RUN yum -y install $PKGS && \
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{{#!system}}# {{/!system}} echo $PKGS | tr -s '\t ' '\n' > /etc/yum/protected.d/system-pkgs.conf && \
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{{#!system}}# {{/!system}} yum -y clean all
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# Install Python requirements. Using the latest version of pip to avoid issues with
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# outdated system versions. Note most pip installations will use wheels which don't require
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# any compilation but if we need to compile a package from source additional requirements
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# may be needed. For example "pandas" requires: python27-devel, python27-Cython, gcc,
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# gcc-c++, and gcc-gfortran to be compiled from source.
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{{#!python}}# {{/!python}}ENV PKGS \
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{{#!python}}# {{/!python}} python27-devel \
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{{#!python}}# {{/!python}} python27-Cython \
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{{#!python}}# {{/!python}} gcc \
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{{#!python}}# {{/!python}} gcc-c++ \
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{{#!python}}# {{/!python}} gcc-gfortran
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{{#!python}}# {{/!python}}ENV PINNED_PKGS \
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{{#!python}}# {{/!python}} python27
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{{#!python}}# {{/!python}}RUN yum -y install $PKGS $PINNED_PKGS && \
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{{#!python}}# {{/!python}} echo $PINNED_PKGS | tr -s '\t ' '\n' > /etc/yum/protected.d/python.conf && \
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{{#!python}}# {{/!python}} curl https://bootstrap.pypa.io/get-pip.py | python && \
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{{#!python}}# {{/!python}} pip install -r ./requirements.txt && \
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{{#!python}}# {{/!python}} yum -y autoremove $PKGS && \
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{{#!python}}# {{/!python}} yum -y clean all
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# Add and build the all of the required Julia packages. In order to allow the use of
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# BinDeps.jl we need to temporarily install additional system packages.
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#
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# - BinDeps.jl runtime requirements: sudo, make, gcc, unzip, bzip2, xz, unzip
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#
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# BinDeps runtime requirements are only used while other packages are being built which
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# makes them safe to only be temporarily installed. When installing system libraries
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# BinDeps always uses "sudo" to install system packages and waits for user confirmation
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# before installing a package. We'll both install "sudo" and always supply the `-y` flag
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# to ensure that BinDeps installations work automatically. A good test to make sure
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# BinDeps is setup correctly is to run `Pkg.add("Cairo"); Pkg.test("Cairo")`
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#
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# - HDF5.jl requires the EPEL repo to install hdf5 automatically through BinDeps
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# (https://aws.amazon.com/premiumsupport/knowledge-center/ec2-enable-epel/)
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# - yum-config-manager is installed by: yum-utils
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ENV PKGS \
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sudo \
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make \
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gcc \
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gcc-c++ \
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bzip2 \
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xz \
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unzip \
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epel-release \
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yum-utils
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RUN yum -y install $PKGS && \
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yum-config-manager --setopt=assumeyes=1 --save > /dev/null && \
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yum-config-manager --enable epel > /dev/null && \
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yum list installed | tr -s ' ' | cut -d' ' -f1 | sort > /tmp/pre_state && \
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update-metadata && julia -e 'Pkg.update(); Pkg.resolve(); Pkg.build("{{PKGNAME}}")' && \
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yum list installed | tr -s ' ' | cut -d' ' -f1 | sort > /tmp/post_state && \
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comm -3 /tmp/pre_state /tmp/post_state | grep $'\t' | sed 's/\t//' | sed 's/\..*//' > /etc/yum/protected.d/julia-pkgs.conf && \
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rm /tmp/pre_state /tmp/post_state && \
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yum-config-manager --disable epel > /dev/null && \
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for p in $PKGS; do yum -y autoremove $p &>/dev/null && echo "Removed $p" || echo "Skipping removal of $p"; done && \
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yum -y clean all
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# Improve the startup time of packages by pre-compiling {{PKGNAME}} and its dependencies
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# into the default system image.
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# Note: Need to have libc to avoid "/usr/bin/ld: cannot find crti.o: No such file or directory"
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{{#!userimg}}# {{/!userimg}}ENV PKGS \
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{{#!userimg}}# {{/!userimg}} gcc
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{{#!userimg}}# {{/!userimg}}ENV PINNED_PKGS \
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{{#!userimg}}# {{/!userimg}} glibc
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{{#!userimg}}# {{/!userimg}}RUN yum -y install $PKGS $PINNED_PKGS && \
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{{#!userimg}}# {{/!userimg}} cd $JULIA_PATH/base && \
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{{#!userimg}}# {{/!userimg}} source $JULIA_PATH/Make.user && \
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{{#!userimg}}# {{/!userimg}} $JULIA_PATH/julia -C $MARCH --output-o $JULIA_PATH/userimg.o --sysimage $JULIA_PATH/usr/lib/julia/sys.so --startup-file=no -e "using {{PKGNAME}}" && \
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{{#!userimg}}# {{/!userimg}} cc -shared -o $JULIA_PATH/userimg.so $JULIA_PATH/userimg.o -ljulia -L$JULIA_PATH/usr/lib && \
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{{#!userimg}}# {{/!userimg}} mv $JULIA_PATH/userimg.o $JULIA_PATH/usr/lib/julia/sys.o && \
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{{#!userimg}}# {{/!userimg}} mv $JULIA_PATH/userimg.so $JULIA_PATH/usr/lib/julia/sys.so && \
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{{#!userimg}}# {{/!userimg}} yum -y autoremove $PKGS && \
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{{#!userimg}}# {{/!userimg}} yum -y clean all
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