977 lines
144 KiB
Plaintext
977 lines
144 KiB
Plaintext
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{
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"cells": [
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{
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"cell_type": "code",
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"execution_count": 1,
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"metadata": {},
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"outputs": [],
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"source": [
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"using DelimitedFiles"
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]
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},
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{
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"cell_type": "code",
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"execution_count": 2,
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"metadata": {},
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"outputs": [],
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"source": [
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"covidbycountry = DelimitedFiles.readdlm(\"who_covid_trans.csv\",',',header=false);"
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]
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},
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{
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"cell_type": "code",
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"execution_count": 3,
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"metadata": {},
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"outputs": [],
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"source": [
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"#? writedlm"
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]
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},
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{
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"cell_type": "code",
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"execution_count": 4,
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"metadata": {},
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"outputs": [
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{
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"data": {
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"text/plain": [
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"115×213 Array{Any,2}:\n",
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" \"Date\" \"China\" \"Singapore\" … \"Mauritania\" \"Comoros\"\n",
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" \"1/21/2020\" 278 0 0 0 \n",
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" \"1/22/2020\" 309 0 0 0 \n",
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" \"1/23/2020\" 571 0 0 0 \n",
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" \"1/24/2020\" 830 1 0 0 \n",
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" \"1/25/2020\" 1297 3 … 0 0 \n",
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" \"1/26/2020\" 1985 3 0 0 \n",
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" \"1/27/2020\" 2741 4 0 0 \n",
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" \"1/28/2020\" 4537 7 0 0 \n",
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" \"1/29/2020\" 5997 7 0 0 \n",
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" \"1/30/2020\" 7736 10 … 0 0 \n",
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" \"1/31/2020\" 9720 13 0 0 \n",
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" \"02/01/2020\" 11821 16 0 0 \n",
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" ⋮ ⋱ \n",
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" \"05/02/2020\" 84388 17101 8 1 \n",
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" \"05/03/2020\" 84393 17548 8 3 \n",
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" \"05/04/2020\" 84400 18205 … 8 3 \n",
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" \"05/05/2020\" 84404 18778 8 4 \n",
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" \"05/06/2020\" 84406 19410 8 4 \n",
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" \"05/07/2020\" 84409 20198 8 8 \n",
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" \"05/08/2020\" 84415 20939 8 8 \n",
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" \"05/09/2020\" 84416 21707 … 8 8 \n",
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" \"05/10/2020\" 84430 22460 8 11 \n",
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" \"05/11/2020\" 84450 23336 8 11 \n",
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" \"05/12/2020\" 84451 23822 8 11 \n",
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" \"5/13/2020\" 84458 24671 8 11 "
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]
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},
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"execution_count": 4,
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"metadata": {},
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"output_type": "execute_result"
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}
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],
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"source": [
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"covidbycountry"
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]
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},
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{
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"cell_type": "code",
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"execution_count": 5,
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"metadata": {},
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"outputs": [
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{
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"data": {
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"text/plain": [
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"213-element Array{Any,1}:\n",
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" \"Date\" \n",
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" \"China\" \n",
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" \"Singapore\" \n",
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" \"Japan\" \n",
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" \"Republic of Korea\"\n",
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" \"Philippines\" \n",
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" \"Australia\" \n",
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" \"Malaysia\" \n",
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" \"New Zealand\" \n",
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" \"Vietnam\" \n",
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" \"Brunei Darussalam\"\n",
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" \"Cambodia\" \n",
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" \"Mongolia\" \n",
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" ⋮ \n",
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" \"South Sudan\" \n",
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" \"Malawi\" \n",
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" \"Eritrea\" \n",
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" \"Angola\" \n",
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" \"Zimbabwe\" \n",
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" \"Botswana\" \n",
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" \"Burundi\" \n",
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" \"Gambia\" \n",
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" \"Namibia\" \n",
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" \"Seychelles\" \n",
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" \"Mauritania\" \n",
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" \"Comoros\" "
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]
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},
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"execution_count": 5,
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"metadata": {},
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"output_type": "execute_result"
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}
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],
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"source": [
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"namesofcolums = covidbycountry[1,:]"
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]
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},
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{
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"cell_type": "code",
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"execution_count": 43,
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"metadata": {},
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"outputs": [
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{
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"data": {
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"text/plain": [
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"getindexbycountryname (generic function with 1 method)"
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]
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},
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"execution_count": 43,
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"metadata": {},
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"output_type": "execute_result"
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}
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],
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"source": [
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"function getindexbycountryname(name::String)\n",
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" for i in 1:length(namesofcolums)\n",
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" if lowercase(name) == lowercase(namesofcolums[i])\n",
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" return i\n",
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" end\n",
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" end\n",
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"end"
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]
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},
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{
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"cell_type": "code",
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"execution_count": 47,
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"metadata": {},
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"outputs": [
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{
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"data": {
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"text/plain": [
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"119"
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]
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},
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"execution_count": 47,
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|
"metadata": {},
|
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|
"output_type": "execute_result"
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|
}
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],
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"source": [
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"getindexbycountryname(\"Mexico\")"
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]
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},
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|
{
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"cell_type": "code",
|
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|
"execution_count": 10,
|
|||
|
"metadata": {},
|
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"outputs": [],
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|
"source": [
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|
"covidbycountry = covidbycountry[2:end,:];"
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|
]
|
|||
|
},
|
|||
|
{
|
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|
"cell_type": "code",
|
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|
"execution_count": 11,
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|||
|
"metadata": {},
|
|||
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"outputs": [
|
|||
|
{
|
|||
|
"data": {
|
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|
"text/plain": [
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|
"114-element Array{Any,1}:\n",
|
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|
" \"1/21/2020\" \n",
|
|||
|
" \"1/22/2020\" \n",
|
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|
" \"1/23/2020\" \n",
|
|||
|
" \"1/24/2020\" \n",
|
|||
|
" \"1/25/2020\" \n",
|
|||
|
" \"1/26/2020\" \n",
|
|||
|
" \"1/27/2020\" \n",
|
|||
|
" \"1/28/2020\" \n",
|
|||
|
" \"1/29/2020\" \n",
|
|||
|
" \"1/30/2020\" \n",
|
|||
|
" \"1/31/2020\" \n",
|
|||
|
" \"02/01/2020\"\n",
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|
" \"02/02/2020\"\n",
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|
" ⋮ \n",
|
|||
|
" \"05/02/2020\"\n",
|
|||
|
" \"05/03/2020\"\n",
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|||
|
" \"05/04/2020\"\n",
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|||
|
" \"05/05/2020\"\n",
|
|||
|
" \"05/06/2020\"\n",
|
|||
|
" \"05/07/2020\"\n",
|
|||
|
" \"05/08/2020\"\n",
|
|||
|
" \"05/09/2020\"\n",
|
|||
|
" \"05/10/2020\"\n",
|
|||
|
" \"05/11/2020\"\n",
|
|||
|
" \"05/12/2020\"\n",
|
|||
|
" \"5/13/2020\" "
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|
]
|
|||
|
},
|
|||
|
"execution_count": 11,
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|
"metadata": {},
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|||
|
"output_type": "execute_result"
|
|||
|
}
|
|||
|
],
|
|||
|
"source": [
|
|||
|
"col1 = covidbycountry[:,1]"
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|
]
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|
},
|
|||
|
{
|
|||
|
"cell_type": "code",
|
|||
|
"execution_count": 12,
|
|||
|
"metadata": {},
|
|||
|
"outputs": [],
|
|||
|
"source": [
|
|||
|
"using Dates"
|
|||
|
]
|
|||
|
},
|
|||
|
{
|
|||
|
"cell_type": "code",
|
|||
|
"execution_count": 13,
|
|||
|
"metadata": {},
|
|||
|
"outputs": [],
|
|||
|
"source": [
|
|||
|
"for i in 1:length(col1)\n",
|
|||
|
" col1[i] = Dates.DateTime(col1[i], \"m/d/y\")\n",
|
|||
|
"end"
|
|||
|
]
|
|||
|
},
|
|||
|
{
|
|||
|
"cell_type": "code",
|
|||
|
"execution_count": 14,
|
|||
|
"metadata": {},
|
|||
|
"outputs": [
|
|||
|
{
|
|||
|
"data": {
|
|||
|
"text/plain": [
|
|||
|
"114-element Array{Any,1}:\n",
|
|||
|
" 2020-01-21T00:00:00\n",
|
|||
|
" 2020-01-22T00:00:00\n",
|
|||
|
" 2020-01-23T00:00:00\n",
|
|||
|
" 2020-01-24T00:00:00\n",
|
|||
|
" 2020-01-25T00:00:00\n",
|
|||
|
" 2020-01-26T00:00:00\n",
|
|||
|
" 2020-01-27T00:00:00\n",
|
|||
|
" 2020-01-28T00:00:00\n",
|
|||
|
" 2020-01-29T00:00:00\n",
|
|||
|
" 2020-01-30T00:00:00\n",
|
|||
|
" 2020-01-31T00:00:00\n",
|
|||
|
" 2020-02-01T00:00:00\n",
|
|||
|
" 2020-02-02T00:00:00\n",
|
|||
|
" ⋮ \n",
|
|||
|
" 2020-05-02T00:00:00\n",
|
|||
|
" 2020-05-03T00:00:00\n",
|
|||
|
" 2020-05-04T00:00:00\n",
|
|||
|
" 2020-05-05T00:00:00\n",
|
|||
|
" 2020-05-06T00:00:00\n",
|
|||
|
" 2020-05-07T00:00:00\n",
|
|||
|
" 2020-05-08T00:00:00\n",
|
|||
|
" 2020-05-09T00:00:00\n",
|
|||
|
" 2020-05-10T00:00:00\n",
|
|||
|
" 2020-05-11T00:00:00\n",
|
|||
|
" 2020-05-12T00:00:00\n",
|
|||
|
" 2020-05-13T00:00:00"
|
|||
|
]
|
|||
|
},
|
|||
|
"execution_count": 14,
|
|||
|
"metadata": {},
|
|||
|
"output_type": "execute_result"
|
|||
|
}
|
|||
|
],
|
|||
|
"source": [
|
|||
|
"col1"
|
|||
|
]
|
|||
|
},
|
|||
|
{
|
|||
|
"cell_type": "code",
|
|||
|
"execution_count": 15,
|
|||
|
"metadata": {},
|
|||
|
"outputs": [
|
|||
|
{
|
|||
|
"data": {
|
|||
|
"text/plain": [
|
|||
|
"dayssince (generic function with 1 method)"
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|
]
|
|||
|
},
|
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|
"execution_count": 15,
|
|||
|
"metadata": {},
|
|||
|
"output_type": "execute_result"
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|||
|
}
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|
],
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|
"source": [
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|
"dayssince(x) = Dates.datetime2rata(col1[length(col1)]) - Dates.datetime2rata(x)"
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|
]
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|
},
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|
{
|
|||
|
"cell_type": "code",
|
|||
|
"execution_count": 16,
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|||
|
"metadata": {},
|
|||
|
"outputs": [],
|
|||
|
"source": [
|
|||
|
"epidays = Array{Int64}(undef,length(col1));"
|
|||
|
]
|
|||
|
},
|
|||
|
{
|
|||
|
"cell_type": "code",
|
|||
|
"execution_count": 17,
|
|||
|
"metadata": {},
|
|||
|
"outputs": [],
|
|||
|
"source": [
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|
"for i = 1:length(col1)\n",
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|
" epidays[i] = abs(dayssince(col1[i]))\n",
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"end"
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|
]
|
|||
|
},
|
|||
|
{
|
|||
|
"cell_type": "code",
|
|||
|
"execution_count": 18,
|
|||
|
"metadata": {},
|
|||
|
"outputs": [],
|
|||
|
"source": [
|
|||
|
"epidays = epidays[end:-1:1,end:-1:1];"
|
|||
|
]
|
|||
|
},
|
|||
|
{
|
|||
|
"cell_type": "code",
|
|||
|
"execution_count": 19,
|
|||
|
"metadata": {},
|
|||
|
"outputs": [
|
|||
|
{
|
|||
|
"data": {
|
|||
|
"text/plain": [
|
|||
|
"114×1 Array{Int64,2}:\n",
|
|||
|
" 0\n",
|
|||
|
" 1\n",
|
|||
|
" 2\n",
|
|||
|
" 3\n",
|
|||
|
" 4\n",
|
|||
|
" 5\n",
|
|||
|
" 6\n",
|
|||
|
" 7\n",
|
|||
|
" 8\n",
|
|||
|
" 9\n",
|
|||
|
" 10\n",
|
|||
|
" 11\n",
|
|||
|
" 12\n",
|
|||
|
" ⋮\n",
|
|||
|
" 102\n",
|
|||
|
" 103\n",
|
|||
|
" 104\n",
|
|||
|
" 105\n",
|
|||
|
" 106\n",
|
|||
|
" 107\n",
|
|||
|
" 108\n",
|
|||
|
" 109\n",
|
|||
|
" 110\n",
|
|||
|
" 111\n",
|
|||
|
" 112\n",
|
|||
|
" 113"
|
|||
|
]
|
|||
|
},
|
|||
|
"execution_count": 19,
|
|||
|
"metadata": {},
|
|||
|
"output_type": "execute_result"
|
|||
|
}
|
|||
|
],
|
|||
|
"source": [
|
|||
|
"epidays"
|
|||
|
]
|
|||
|
},
|
|||
|
{
|
|||
|
"cell_type": "code",
|
|||
|
"execution_count": 36,
|
|||
|
"metadata": {},
|
|||
|
"outputs": [
|
|||
|
{
|
|||
|
"data": {
|
|||
|
"text/plain": [
|
|||
|
"114×1 Array{Int64,2}:\n",
|
|||
|
" 0\n",
|
|||
|
" 1\n",
|
|||
|
" 2\n",
|
|||
|
" 3\n",
|
|||
|
" 4\n",
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" 5\n",
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" 6\n",
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" 7\n",
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" 8\n",
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" 9\n",
|
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" 10\n",
|
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" 11\n",
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|
" 12\n",
|
|||
|
" ⋮\n",
|
|||
|
" 102\n",
|
|||
|
" 103\n",
|
|||
|
" 104\n",
|
|||
|
" 105\n",
|
|||
|
" 106\n",
|
|||
|
" 107\n",
|
|||
|
" 108\n",
|
|||
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" 109\n",
|
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" 110\n",
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|
" 111\n",
|
|||
|
" 112\n",
|
|||
|
" 113"
|
|||
|
]
|
|||
|
},
|
|||
|
"execution_count": 36,
|
|||
|
"metadata": {},
|
|||
|
"output_type": "execute_result"
|
|||
|
}
|
|||
|
],
|
|||
|
"source": [
|
|||
|
"covidbycountry[:,1] = epidays;"
|
|||
|
]
|
|||
|
},
|
|||
|
{
|
|||
|
"cell_type": "code",
|
|||
|
"execution_count": 41,
|
|||
|
"metadata": {},
|
|||
|
"outputs": [],
|
|||
|
"source": [
|
|||
|
"row,col =size(covidbycountry)\n",
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|||
|
"for j = 1:col\n",
|
|||
|
" for i = 1:row\n",
|
|||
|
" covidbycountry[i,j] = Int(covidbycountry[i,j])\n",
|
|||
|
" end\n",
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|||
|
"end"
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|||
|
]
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],
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|
"cell_type": "code",
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"execution_count": 20,
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"metadata": {},
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{
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"text": [
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|||
|
"\u001b[32m\u001b[1m Updating\u001b[22m\u001b[39m registry at `~/.julia/registries/General`\n",
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|||
|
"\u001b[32m\u001b[1m Updating\u001b[22m\u001b[39m git-repo `https://github.com/JuliaRegistries/General.git`\n",
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|||
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"\u001b[?25l\u001b[2K\u001b[?25h\u001b[32m\u001b[1m Resolving\u001b[22m\u001b[39m package versions...\n",
|
|||
|
"\u001b[32m\u001b[1m Updating\u001b[22m\u001b[39m `~/.julia/environments/v1.2/Project.toml`\n",
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|
"\u001b[90m [no changes]\u001b[39m\n",
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|||
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"\u001b[90m [no changes]\u001b[39m\n"
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|||
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]
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}
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"source": [
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|||
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|||
|
"#Pkg.add(\"Plots\")"
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|
]
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|||
|
},
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|
{
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|
"cell_type": "code",
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"execution_count": 21,
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"metadata": {},
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"outputs": [
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"name": "stderr",
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"output_type": "stream",
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"text": [
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"┌ Info: Recompiling stale cache file /Users/eddie/.julia/compiled/v1.2/Plots/ld3vC.ji for Plots [91a5bcdd-55d7-5caf-9e0b-520d859cae80]\n",
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"└ @ Base loading.jl:1240\n"
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|
]
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}
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|
],
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"source": [
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|||
|
"using Plots"
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]
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{
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|
"cell_type": "code",
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"execution_count": 22,
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"metadata": {},
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"outputs": [
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{
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"data": {
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"text/plain": [
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|||
|
"Plots.GRBackend()"
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]
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},
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"execution_count": 22,
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|||
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"metadata": {},
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|
"output_type": "execute_result"
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|||
|
}
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|||
|
],
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|||
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"source": [
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|||
|
"gr()"
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|||
|
]
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|||
|
},
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|
{
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|
"cell_type": "code",
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|||
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{
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"5"
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"output_type": "execute_result"
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}
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"source": [
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]
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|
},
|
|||
|
"execution_count": 42,
|
|||
|
"metadata": {},
|
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|
"output_type": "execute_result"
|
|||
|
},
|
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|
{
|
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|
"name": "stderr",
|
|||
|
"output_type": "stream",
|
|||
|
"text": [
|
|||
|
"GKS: character ignored due to unicode error\n",
|
|||
|
"GKS: character ignored due to unicode error\n",
|
|||
|
"GKS: character ignored due to unicode error\n",
|
|||
|
"GKS: character ignored due to unicode error\n",
|
|||
|
"GKS: character ignored due to unicode error\n",
|
|||
|
"GKS: character ignored due to unicode error\n",
|
|||
|
"GKS: character ignored due to unicode error\n",
|
|||
|
"GKS: character ignored due to unicode error\n",
|
|||
|
"GKS: character ignored due to unicode error\n",
|
|||
|
"GKS: character ignored due to unicode error\n",
|
|||
|
"GKS: character ignored due to unicode error\n",
|
|||
|
"GKS: character ignored due to unicode error\n",
|
|||
|
"GKS: character ignored due to unicode error\n",
|
|||
|
"GKS: character ignored due to unicode error\n",
|
|||
|
"GKS: character ignored due to unicode error\n",
|
|||
|
"GKS: character ignored due to unicode error\n",
|
|||
|
"GKS: character ignored due to unicode error\n",
|
|||
|
"GKS: character ignored due to unicode error\n",
|
|||
|
"GKS: character ignored due to unicode error\n",
|
|||
|
"GKS: character ignored due to unicode error\n",
|
|||
|
"GKS: character ignored due to unicode error\n",
|
|||
|
"GKS: character ignored due to unicode error\n",
|
|||
|
"GKS: character ignored due to unicode error\n",
|
|||
|
"GKS: character ignored due to unicode error\n"
|
|||
|
]
|
|||
|
}
|
|||
|
],
|
|||
|
"source": [
|
|||
|
"plot(covidbycountry[:,1],[covidbycountry[:,119] covidbycountry[:,2]],linetype= :scatter, \n",
|
|||
|
" marker= (:diamond,5),\n",
|
|||
|
" title = \"COVID-19 Compaarisson China/Mexico\",\n",
|
|||
|
" xlabel = \"Days since 21 January 2020\",\n",
|
|||
|
" ylabel = \"Total cases to date\",\n",
|
|||
|
" label = [\"Mexico\" \"China\"]\n",
|
|||
|
")"
|
|||
|
]
|
|||
|
},
|
|||
|
{
|
|||
|
"cell_type": "code",
|
|||
|
"execution_count": null,
|
|||
|
"metadata": {},
|
|||
|
"outputs": [],
|
|||
|
"source": []
|
|||
|
}
|
|||
|
],
|
|||
|
"metadata": {
|
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|
"kernelspec": {
|
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|
"display_name": "Julia 1.2.0",
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|
"language": "julia",
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|||
|
"name": "julia-1.2"
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|
},
|
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|
"language_info": {
|
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|
"file_extension": ".jl",
|
|||
|
"mimetype": "application/julia",
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|
"name": "julia",
|
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|
"version": "1.2.0"
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|
}
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|
},
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|
"nbformat": 4,
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|
"nbformat_minor": 4
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|
}
|